PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G109300.3
Common NameB456_007G109300, LOC105802806
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 617aa    MW: 68106.4 Da    PI: 6.7245
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G109300.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.45.1e-13447493455
                         HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI++Lq
  Gorai.007G109300.3 447 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYINELQ 493
                         799***********************66......******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.2E-5652240IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474594.19E-18442506IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.047443492IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.46E-15446497No hitNo description
Gene3DG3DSA:4.10.280.106.0E-18447506IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-10447493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-16449498IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 617 aa     Download sequence    Send to blast
MKIELGMGGG AWNDEDKAMV AAVLGTRAFD YLISSSVSNE NLLMTVSSDE NLQNKLSDLV  60
DRPNASNFSW NYAIFWQISR SKSGDWALGW GDGCCREPKE GEESEATRIL NLRLEDDTQQ  120
RMRKRVLQKL HTLFGGSDED NYALGLDRVT DTEMFFLASM YFSFPQGEGG PGKCFLSGKH  180
VWLSDALKSG SDYCVRSFLT KSAGVQTIVL VPTDVGVVEL GSVRSVPESM ELLQSIRSSF  240
SSNSSLLRAK QMVAAAPVVN EKKHENPSHF SNLGIVERVE GIPKIFGQDL NNASHGHSNY  300
REKLAVRKME DRPTWAAYAN GVKLPFTRNQ NGIHAPGWPH VHGVKQGSGT EFYGSQTTAN  360
NLQELVNGAR EEFRLNQYQS PKPVQMQIDF SGATSRPSPA TTRPLSAESE HSDVEASCKE  420
DKPSPADERR PRKRGRKPAN GREEPLNHVE AERQRREKLN QRFYALRAVV PNISKMDKAS  480
LLGDAIAYIN ELQAKLKVME SEREKFGSTS RDSAGLDPNI NAENHIGAAN IDVQAVHDEV  540
VVRVSCPLDS HPASRVIQAF KDAHVNVLES KLVTADDTVF HTFVIKSQGS EQLTREKLIA  600
AFSCEPNSLQ PLSSLG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A8e-25482435195Transcription factor MYC3
4rqw_B8e-25482435195Transcription factor MYC3
4rs9_A8e-25482435195Transcription factor MYC3
4yz6_A8e-25482435195Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1428436RRPRKRGRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012490129.10.0PREDICTED: transcription factor bHLH13
SwissprotQ9LNJ50.0BH013_ARATH; Transcription factor bHLH13
TrEMBLA0A0D2P7500.0A0A0D2P750_G
STRINGPOPTR_0014s09520.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.30.0bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]